PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088598.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 192aa    MW: 22167.1 Da    PI: 5.1452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088598.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-052547123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ Fs+   L  H++ H
  XP_010088598.1 25 YTCNFCKRGFSNAQALGGHMNIH 47
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-72352No hitNo description
Gene3DG3DSA:3.30.160.607.4E-52349IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3652552IPR007087Zinc finger, C2H2
SMARTSM003550.00882547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKFDQIKWG TSDDQISGSG QVRSYTCNFC KRGFSNAQAL GGHMNIHRRD RARIRQFSEE  60
NNNQVSQETN TNINPPLDIN DDPNTNLHDE KSSTSFELER LSEQQSGLNI NNKNPYSMVR  120
DHDQLYHDQQ AMASHRGKVF GGEEVVQQIP FFVEESSEKT PEKTTEELDL ELRLGRERQD  180
ASTKHLSTRE FF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088598.11e-143Transcriptional regulator TAC1
TrEMBLW9QFY21e-143W9QFY2_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-17C2H2 family protein